YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111070228
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAANLACARR QLQHRSDFKL PHIPQTRRLR SSTMEDNRLF RFPRPAWLNS ANTRTFGVYT  60
   61 AGALFALGFY TLIDIAVWSK SIMNPSDPAV HITFVDWIPG ICSALGMLVI NSIDKSRLSA 120
  121 DSFSYSGNGV AWKAKLVLFL GFALLAGGLA GSVVVLVMKY IVPEYVWPTI WMGVGNVIAN 180
  181 SLIMLSSAVL WIAQNMEDEY TYNLAL

Type	Start	End	Confidence
Cytoplasmic	1	54	0.94
Transmembrane Helix	55	77	0.87
Non-Cytoplasmic	78	91	0.86
Transmembrane Helix	92	113	0.88
Cytoplasmic	114	135	0.88
Transmembrane Helix	136	158	0.91
Non-Cytoplasmic	159	169	0.75
Transmembrane Helix	170	192	0.90
Cytoplasmic	193	206	0.90