YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169597653, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVLTKEEEE AHYNATIKGG SIGGLIGTAV GAAAVAGASR RYPSFRALTV PFRAFLVAST  60
   61 GTFVAVIAAD RASAAYDIEH TPEKKRQQER QQERDALYEA NKSGLQRAKD WANENRYPLL 120
  121 FGFWVASMAG SWSAVNRNRY LSGSQKLVQA RMYAQGATLA ALLASFAIEG NDAAKGKGRW 180
  181 ETIRVLDPND PEHKHMIEKK VHHESYPGED QWREMIEAEE ERIKEREAAK KKSQAQAEAK 240
  241 KHEQKADQKE SKAKAESKE

Type	Start	End	Confidence
Cytoplasmic	1	16	0.64
Transmembrane Helix	17	38	0.84
Non-Cytoplasmic	39	48	0.52
Transmembrane Helix	49	69	0.81
Cytoplasmic	70	116	0.62
Transmembrane Helix	117	135	0.83
Non-Cytoplasmic	136	151	0.61
Transmembrane Helix	152	170	0.40
Cytoplasmic	171	259	0.60