YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169597637, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	217	0.96
Transmembrane Helix	218	242	0.88
Non-Cytoplasmic	243	254	0.80
Transmembrane Helix	255	275	0.90
Cytoplasmic	276	285	0.75
Transmembrane Helix	286	304	0.95
Non-Cytoplasmic	305	310	0.78
Transmembrane Helix	311	333	0.91
Cytoplasmic	334	343	0.76
Transmembrane Helix	344	366	0.91
Non-Cytoplasmic	367	377	0.75
Transmembrane Helix	378	395	0.86
Cytoplasmic	396	444	0.84
Transmembrane Helix	445	462	0.76
Non-Cytoplasmic	463	492	0.68
Transmembrane Helix	493	514	0.93
Cytoplasmic	515	532	0.94
Transmembrane Helix	533	554	0.92
Non-Cytoplasmic	555	562	0.82
Transmembrane Helix	563	585	0.89
Cytoplasmic	586	594	0.65
Transmembrane Helix	595	618	0.77
Non-Cytoplasmic	619	628	0.74
Transmembrane Helix	629	651	0.95
Cytoplasmic	652	710	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEEDYEILR NRADANPSEY TQWDPNRQFR SQYAELHKDD ANYEERTRIA KEREQEQQQP  60
   61 GKAASPLPQL ELEEVATPLS RHSSASSSSS SSSASTQDGA RLEEIRTAHS TGRDRAATVT 120
  121 SQASSGNILH LHPTERHPEA IRRIETHRSQ HAGTVGAAQT PSRLTQTLSR RRTERALPGL 180
  181 GAGKPFPPLL PDREEYVVEF EGVDDPLHAQ NWPMKKKLVI GAILAFDALA ATMGSSIFSA 240
  241 AIGPVSREFG VINEVGTLGT SLFVFGYAFG PLIWAPWSEL YGRKPPIIIA AFGFSIFSIA 300
  301 VAVGKDLQTI LICRFFAGLF GSSPLAIVAA VFADMFDNKL RGMAVAVFSA TVFMGPLLAP 360
  361 FIGGFITSSS LGWRWTEYIS SFMGFMALAL LLLFMEETYP PVVLINKAAE LRRRTKNWGI 420
  421 HAKQEEIEVD FKELIVRNIS RPMRILFTEP IVLLITLYMS FISNETSDGL LYLFLTAYAL 480
  481 VFQGVYGWSP GVAGLAYFGM VVGEIIAFII IITTNSRYVK KLEANNNIPV PEWRLPISMV 540
  541 GGVLFTGGLF WFGWSGYSGN VHWIVPVLSG LLTGFGIFSI FLSLLNYLVD AYLMFAASAI 600
  601 AANTFMRSIF GGIFPLFATY MFNGMGIQWA STLLGCVALV LVPMPVVFYV FGKRIRAKSK 660
  661 FAPAPDIEQD KRRDEESRYT QEEAAETRSG STTEGEEAAR EIQKEKSKEQ