YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111068729
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.76
Transmembrane Helix	31	53	0.86
Cytoplasmic	54	78	0.76
Transmembrane Helix	79	99	0.90
Non-Cytoplasmic	100	104	0.64
Transmembrane Helix	105	126	0.91
Cytoplasmic	127	131	0.80
Transmembrane Helix	132	152	0.87
Non-Cytoplasmic	153	168	0.78
Transmembrane Helix	169	192	0.89
Cytoplasmic	193	200	0.78
Transmembrane Helix	201	223	0.91
Non-Cytoplasmic	224	239	0.76
Transmembrane Helix	240	260	0.95
Cytoplasmic	261	271	0.67
Transmembrane Helix	272	292	0.90
Non-Cytoplasmic	293	299	0.66
Transmembrane Helix	300	321	0.79
Cytoplasmic	322	676	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDATAHVLYA ANDLHARAGG MGGDTASRPG SYKIIGLVLA IASGVFIGTS FVIKKHGLLQ  60
   61 ANEKYNEEAG EGYGYLKNAW WWLGMTLMIL GEVCNLVAYA FTDAILVTPM GALSVVICAI 120
  121 LSTIFLKERL SFVGKVGCFN CIIGSVVIAV NAPEQSSVAR IQDMKRWVIA PGFLSYAGVV 180
  181 IIACVVIALW LGPKYGKKTM MVYITICSLI GGLSVVATQG LGAAVVAQAS GKYGGQFKEW 240
  241 FLYVLLVFVV ITLLTEIIYL NKALNLFNAA LVTPTYYVFF TSATIVTSAV LFQGFKGTPL 300
  301 QIVTVIMGFF QICSGVVLLQ LSKSAKDVPD AAVFKGDLDQ VRQVAEVEEP EYEPRADALR 360
  361 GGSAILRSLS RARSEKEAME VRKIKEEHMQ PIGEGEQVEF DGIRRRRTIM DPNRPLTRSG 420
  421 TTVQTKMAHP PLGMSHFPTY ESDDDNDSFH PGFFQRLRSR GKSTSSRGSA HAVGSSGVGM 480
  481 KNLPPIPTDG ASDVSDKDSY KYNITQDTSY KPNDAHIQFA ELPHPGMPPE RTASPSSLEV 540
  541 PRQPANIAKR QFSFQNVFHR NRGDSTGEAS GSRRPTSRNS RKSSRDGKDV ATEEERLGLV 600
  601 KGDSSNLLPI ASHISEEPNL VSYSDEPDWS MPRSQSPGYS PIRSAPPPRR VDTEDDVDPR 660
  661 DDKEFEKGRP NSNVFL