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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|111068504
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSPDGRAN QGAASYAEAA APHGSAGHHD SGDQPGPSSS GVGKKKKHRG GGKKKRNRRQ  60
   61 SFAPTADIVT GDMNTERPSL ANVAANSRGS NSFYRSHGNL SSTSLESEAL LDHREQPQLR 120
  121 TRRPSVPITQ QIYQPRPSQP FNSAAHRLNA VASSNYGRSR LSHTPEATYS DDEDANDRTP 180
  181 LMGTSQRDIR TGTSYGGASS SSNRHRKSSA SSGMNNRPDL FTQRHHSQTN LDDYDVNNPP 240
  241 SVPTSPVVKA SNGLHDVMLT EDLADTPERS RSRDALIDVE HDDDDEPRDL RRRMTTSAIE 300
  301 DVCFPHETMS ELGHEDYLNP PTKGEPTSRR RRRRWPDLDI LDSYAREEKE QRTMEGMRMR 360
  361 KVSEPLMVEG RLRPRRRVWH REASDAPFRF TYFNETFDNT IHSQTIGELV QPGQTFRNLF 420
  421 VPDPVILEDS SDDDSDDDDM RRVSMNGFPS RATTLSPSKA DSGEQTRATT PRQSNTPKPE 480
  481 EDKPKRYGPR PAWWLDVMSP TETEMKVIAK TFGIHPLTTE DILMQEQREK VELFKHYYFI 540
  541 NYRTFEQDEN SEDYLEPVNL YVVNFREGVI SFHFSMTPHP ANVRRRIRQL SDYLVLSPDW 600
  601 ISYAIIDDIT DAYAPMIQRI EEEVDDIDEA ILRLHSDEEE QEAEKAKANS YNTPHAEKRP 660
  661 DGTREGQESG RDMLRRVGEC RKKVMSLYRL LGNKADVIKG FAKRCNEQWD IAPRNEIGMY 720
  721 LGDIQDHIVT MTGNLSHYEN LLSRAHSNYL AQINIRMNER QEKTSDILGK LTVLGTIVLP 780
  781 MNVVTGIWGM NCIVPGQDVE NLNWFFCITG GLVAFGVLCF VIAKRVYGIV 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle