YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111068502
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQTTQEPS PLAPDLTALE RIRQTFAQPV LASFVAGGVA GAVSRTVVSP LERLKILFQV  60
   61 QSVGREEYKM SVPKALAKMW REEGWRGFMA GNGTNCIRIV PYSAVQFSAY NVYKRVAVEQ 120
  121 LLEQHLKRVE EEENDSASVL RQQGTQLTYP QFFESEPGAP LDAYQRLLCG GLAGITSVTC 180
  181 TYPLDIVRTR LSIQSASFSS LKRAEGEKLP GMWSLLVNMY KTEGGFPALY RGIIPTVAGV 240
  241 APYVGLNFMV YEMARTKFTP EGQKDPSAIG KLGAGAVSGA VAQTITYPFD VLRRRFQINT 300
  301 MSGMGYQYSG IFDAVSSIVR TEGVRGMYKG IVPNLLKVAP SMASSWLSFE MTRDMLMGKW 360
  361 NSGFL

Type	Start	End	Confidence
Cytoplasmic	1	25	0.54
Transmembrane Helix	26	48	0.48
Non-Cytoplasmic	49	365	0.71