YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111068282
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	201	0.98
Transmembrane Helix	202	225	0.82
Non-Cytoplasmic	226	246	0.90
Transmembrane Helix	247	269	0.88
Cytoplasmic	270	301	0.93
Transmembrane Helix	302	321	0.91
Non-Cytoplasmic	322	327	0.83
Transmembrane Helix	328	351	0.90
Cytoplasmic	352	357	0.88
Transmembrane Helix	358	376	0.94
Non-Cytoplasmic	377	382	0.67
Transmembrane Helix	383	403	0.90
Cytoplasmic	404	416	0.81
Transmembrane Helix	417	438	0.89
Non-Cytoplasmic	439	455	0.85
Transmembrane Helix	456	476	0.91
Cytoplasmic	477	486	0.74
Transmembrane Helix	487	507	0.87
Non-Cytoplasmic	508	514	0.75
Transmembrane Helix	515	534	0.93
Cytoplasmic	535	614	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSADGTPSN SAISRWLAAQ NNAPPAPLLS PGNEFPLRTL PSLPSDSSLS DIDSEDGAPV  60
   61 ARPGNIAKLI HPKVPSIMEN EPAALNHARR RSSSLAGASV PPKTEQKKHR RRPSEHIAEE 120
  121 GEEECSSDAD RSDSDSRSDS TDFELDDMSA DGLEDDEETG LTKRDRRRRR RRKRRNTMLD 180
  181 QRIVPTTDTY TKEEKKLADQ NLLRSMLING VLIALWYLFS ISISVYNKWM FKEAKDGGEA 240
  241 TNIFPFPLFT TCLHMIVQFS LASLVLFCIP SLRPRHDSLN PHAPGARVEP VDPKKPLMTK 300
  301 WFYFSRIGPC GAATGMDIGL GNTSLKFISL TFFTMCKSSA LGFVLIFAFL FRLEQPSWRL 360
  361 VFIISIMTVG VIMMVAGETA FHALGFILVM ASACSSGFRW SLTQILLLRN PATANPFSSI 420
  421 FFLAPVMFAS LIVLAVPVEG FPALREGLAR LFEMKGTGLG IGILIFPGVL AFLMTSSEFA 480
  481 LLKRTSVVTL SICGIFKEVV TIGTANLVFD DPLTPVNISG LVVTIGSIAA YNYMKIKKMR 540
  541 EEARMNAHLQ NQENYAPVNM VDPDRDRRGS IAQPPTGTRS MIRSSLQLAP GLGGAAAIDS 600
  601 PSRASPIKRP EDLD