YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111066744, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.93
Transmembrane Helix	13	34	0.89
Non-Cytoplasmic	35	70	0.90
Transmembrane Helix	71	91	0.90
Cytoplasmic	92	98	0.79
Transmembrane Helix	99	118	0.95
Non-Cytoplasmic	119	124	0.79
Transmembrane Helix	125	145	0.92
Cytoplasmic	146	152	0.89
Transmembrane Helix	153	176	0.87
Non-Cytoplasmic	177	192	0.85
Transmembrane Helix	193	211	0.94
Cytoplasmic	212	279	0.95
Transmembrane Helix	280	300	0.83
Non-Cytoplasmic	301	311	0.78
Transmembrane Helix	312	333	0.90
Cytoplasmic	334	340	0.93
Transmembrane Helix	341	363	0.94
Non-Cytoplasmic	364	372	0.84
Transmembrane Helix	373	396	0.91
Cytoplasmic	397	409	0.84
Transmembrane Helix	410	430	0.85
Non-Cytoplasmic	431	444	0.81
Transmembrane Helix	445	465	0.94
Cytoplasmic	466	537	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLMLKKPEG SAGSAFPAIL VGLFVAFGGV LFGYDTGTIG GILGMTYWKD TFSTGYRNEK  60
   61 NELDVDASQS SLIVSILSAG TFFGALTAAP AADFLGRRLG LVACNVVFCV GVILQTIATD 120
  121 IPVFVAGRFF AGYGVGMISA TIPLYQSETA PKWIRGVIVG AYQLAITIGI LLANIVNNAT 180
  181 KDRSDTGSYR IPIAVQFAWA IILFVGCIFL PETPRWYIKK GKPEAAAKSL STLRRLDIDH 240
  241 PAVVEELAEI TANHEYELSL GKSTYLDCFK GNLGKRLATG CLLQALQQLT GVNFIFYYGT 300
  301 SFFQRAGFKN PFIISMITSS VNVASTFPGL YLVEKWGRRN LLLFGAVGMA VCQFIVAITG 360
  361 TVAGVENQAA QNALVAFVCI YIFFFACSWG PVAWVVTGEI FPLKVRAKSL SMTTASNWLL 420
  421 NFAIGYATPY MVNDGPGNAN LGAKVFFVWG GFCFICGFFV WALIYETKGL SLEQVDELYG 480
  481 KVSKAWKSQG FVPTVSFQDV QDIQGDNRRK SLTDVEAEAS RKRSAQYTEG FNEKSTV