YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111065327, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLEAKEARR RRSSSLVYKE PPESLEQLSD QSALPNLNAE WVNAKGAWAI HIVLIFLGKI  60
   61 LFDIMPGMSQ ETSWTLVNLS YMAGSYLMFH YVRGVPFDFN AGAFDNLNMW EQIDNGDQYT 120
  121 PAKKFLLSVP IVLFLVSTHY THYDSTYFVV NCLATLAVVV PKLPSLHRIR FSIFSSPPDD 180
  181 A

Type	Start	End	Confidence
Non-Cytoplasmic	1	43	0.58
Transmembrane Helix	44	63	0.79
Cytoplasmic	64	73	0.54
Transmembrane Helix	74	92	0.73
Non-Cytoplasmic	93	144	0.68
Transmembrane Helix	145	166	0.73
Cytoplasmic	167	181	0.84