YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111065179
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSRQYQIP STPRVISPSP TPSEVGSGKD GYFGPVTRSS TRKSKQYSSA HSPPPIDEDS  60
   61 GSDPEKRARA KSRSPILENG GVGSRQRMSG LTGRRQMKKS MELGTSNGHL SPAQANKNYW 120
  121 REMSRSPSPL GLIPIHQKWR SFIHKHEIPR KILHVSIGFL TLALYATGIQ TASIHPVLLT 180
  181 CLVPIFCADL LRHRYPHINR FYIRCLGAFM RESEVDGYNG VISYLLGAWL VMRWCPKDVG 240
  241 VMSILLLSWC DTAASTFGRL WGRYTPQVRR GKSLAGSLAA FATGIITAGL WWGVLGPMYA 300
  301 EYNTGEYAFA YQGALMLPAQ AREMLGVDTK HATITGYWAL GAMSVAAGFI ASVSEAIDLF 360
  361 GWDDNLTIPV LCGAGLWGFL RVFG

Type	Start	End	Confidence
Cytoplasmic	1	149	0.98
Transmembrane Helix	150	169	0.89
Non-Cytoplasmic	170	173	0.77
Transmembrane Helix	174	195	0.82
Cytoplasmic	196	214	0.87
Transmembrane Helix	215	232	0.82
Non-Cytoplasmic	233	240	0.67
Transmembrane Helix	241	262	0.86
Cytoplasmic	263	273	0.89
Transmembrane Helix	274	295	0.92
Non-Cytoplasmic	296	307	0.82
Transmembrane Helix	308	326	0.54
Cytoplasmic	327	333	0.57
Transmembrane Helix	334	354	0.91
Non-Cytoplasmic	355	364	0.47
Transmembrane Helix	365	383	0.84
Cytoplasmic	384	384	0.65