YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111064668
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGTRRRVLY QLNSRWIYGK IPLLHAAVFL LQMAAVSLLA RKYNSYYAQR PVLTTMITNA  60
   61 VLGGIADTVA QTLTAVRQRA VRKKGGLDKD DFLAIEIHEL DRRNPVNDMD LIPDSKRLPP 120
  121 PFDFERTVRF MSYGFIMSPL QHRWFKFMAS TFPMSKTSTW LPALKRVALD QFLFAPAGLA 180
  181 CFFTFMTVAE GGGKRAVQRK FQDIYVPALK ANWLVWPAVQ IVNFRVMPIQ YQIPFVSTVG 240
  241 IAWTAYLSLT NSAEEATS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.87
Transmembrane Helix	21	40	0.93
Non-Cytoplasmic	41	51	0.86
Transmembrane Helix	52	75	0.81
Cytoplasmic	76	129	0.92
Transmembrane Helix	130	145	0.45
Non-Cytoplasmic	146	171	0.46
Transmembrane Helix	172	189	0.90
Cytoplasmic	190	230	0.56
Transmembrane Helix	231	250	0.56
Non-Cytoplasmic	251	258	0.38