YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111064493
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	40	0.98
Transmembrane Helix	41	63	0.93
Cytoplasmic	64	71	0.83
Transmembrane Helix	72	92	0.93
Non-Cytoplasmic	93	132	0.94
Transmembrane Helix	133	153	0.93
Cytoplasmic	154	160	0.84
Transmembrane Helix	161	181	0.90
Non-Cytoplasmic	182	194	0.87
Transmembrane Helix	195	216	0.89
Cytoplasmic	217	232	0.92
Transmembrane Helix	233	252	0.92
Non-Cytoplasmic	253	262	0.72
Transmembrane Helix	263	284	0.95
Cytoplasmic	285	291	0.92
Transmembrane Helix	292	311	0.92
Non-Cytoplasmic	312	316	0.74
Transmembrane Helix	317	335	0.95
Cytoplasmic	336	348	0.82
Transmembrane Helix	349	369	0.93
Non-Cytoplasmic	370	401	0.86
Transmembrane Helix	402	422	0.92
Cytoplasmic	423	509	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPSSNGADP TLPLQAYNGT GAAGGDSRVD NLNVYYNPGD IAWMITATAL VLLMIPGVGF  60
   61 FYSGLARRKS ALSLLWLSVM STAVVSFQWF FWGYSLAFSH KAGKYIGALD NFGYMNVLGA 120
  121 PSIGSPRIPD LMFAVYQGMF AAITVALAVG AVAERGRMLP CIIYMFVWTT IIYDPIACWT 180
  181 WNSSGWVYRM GGLDFAGGTP VHIASGCAAL AYSYMLGKRS GHGTQELNYR PHNVTHIVIG 240
  241 TVFLWVGWFG FNAGSALSAN LRAVMAAVCT NLAACVGGIT WCLVDYRLER KWSTVGFCSG 300
  301 VIAGLVAITP GSGYVPAWAA VIFGVCGGIA CNYATKLKYF LRCDDALDIF AVHGVGGFVG 360
  361 NILTAFFAAD YIAHLDGYTV IPGGWLNHNW IQLGYQLADS FTGGAYSFVG TCIILGALDF 420
  421 IGKFVPVFRL RASEEEEALG IDDVEIGEFA YDYVELTREV KIPDDDEDVD EGMSTHSLHD 480
  481 HPASMGTHHE KNQESIDSAN QLAEWAHRA