YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111064282, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQIRGTAGY HLGNQSPFGN AGRTDNSTND PSPLDQLRAQ TSKIEDMLDT LSDPIKPYLP  60
   61 AIGRFLIVVT FLEDALRIIT QWRDQLTYLH DYRHIWNGVT HLFLIVNVIV MTGASIMVIA 120
  121 RKHSEYAVAG LMGVVVLQGI GYGLVFDLNF FLRNLSVMGG LLMVLSDSWV RKKFAPAGLP 180
  181 TLDEKDKKMY FQLAGRVLLI FLFVGFVFRG EWGFWRIVAS LLGLVACIMV VVGFKAKFSA 240
  241 IMLVLILSIF NLYVNNFWKL HPHHPHKDFA KYDFFQILSI VGGLLLLVNM GPGQFSVDEK 300
  301 KKVY

Type	Start	End	Confidence
Cytoplasmic	1	60	0.81
Transmembrane Helix	61	80	0.67
Non-Cytoplasmic	81	97	0.83
Transmembrane Helix	98	119	0.91
Cytoplasmic	120	125	0.80
Transmembrane Helix	126	146	0.89
Non-Cytoplasmic	147	150	0.78
Transmembrane Helix	151	170	0.87
Cytoplasmic	171	188	0.92
Transmembrane Helix	189	208	0.91
Non-Cytoplasmic	209	213	0.74
Transmembrane Helix	214	234	0.90
Cytoplasmic	235	239	0.74
Transmembrane Helix	240	258	0.88
Non-Cytoplasmic	259	273	0.77
Transmembrane Helix	274	293	0.90
Cytoplasmic	294	304	0.78