YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|111063891
Protein type: Transmembrane
Type Confidence: 0.80
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQQQHAPG GHYSGHNPIP TVKQFIENLD KDKAERDRQI DQQAREGKGQ TPGQKGLATS  60
   61 TGRDVTASSG AEPHKMQKRS VEGTEQTVTD PVTGNQVTIS DVDKSMMDEV ENPHVVIPNA 120
  121 NLNKDTPIKT DANQSLEDYK YNQDVTAPPD PVAEGTTSDV PIHGEKTNVL FHPTPSVSYE 180
  181 PTFAALEKRA GILCVGLLVA TIVVGKLFGG ALKGLIPLGM CLSSGVWLWT KEVVRSGREV 240
  241 EWESEATRGQ MATLNLLPES VEWMNTLLAI VWGLINPDMF QGVADMLEDV MQASVPGIIE 300
  301 NVRVAEINQG SNPLRILSLR ALPDAHMKEM KEAIHEENKK TKDPQEAAAD EEGGDYYNLE 360
  361 VAFAYHAKPS GKRASDKARN MHMQLVFYLG IKGLFGVPLP IFVELQGLVG TVRLRMAMTP 420
  421 EPPFLKTLTF TLMGAPQVTA GCIPMVEKGV NILNLPLISN FVNYAIKAAA SMYVAPKSMS 480
  481 IDMRAILQGD SVQKDTEALG VLWIRIHRAT GLSKQDRRGS KHGGSDPYIT LAFSKYGKPM 540
  541 YCTRVITDDL NPIWEETAAL LVGPELIKAD ENLSVELWDS DRHTSDDIVG KVEISLQKMI 600
  601 QHPGKMYPQV SKLAGMDAES EMPGELHWEV GYFSKPQFRK EMRTDGKNKA LPDQLKNDPK 660
  661 LQDDKGVINS EEDDAVMHTP PDPLWPSGIC SVIIHQIVNL ELENIKGTTG SPKGREYEPA 720
  721 KPYGEAKEET GGELPTSYCT ILYNDELVYR TRSKAVSSQP IFNAGTERFI RDWRSGIITV 780
  781 TVRDQRNREH DPILGVVPLK LSDILETSSQ VTRWYPLDGG IGFGRVRISL LFRSIETRLP 840
  841 PQMLGWDVGT FEFRSERILA TGYQHAPKIK LRTGGSTGKL GRAHAKKLDE GDGYYFDLAE 900
  901 HEGKYNVRLP VKHRYRSPIV FEFHVANKRK ADAYAVIWLQ HFIDNEDQDI NIPIWTTAHP 960
  961 ARLTQNYITE DNCEKEPGLE DLKEVGRLQF RARFKAGTDE THEAFVSDNN SRETYETWEA1020
 1021 CLTEGVRTRK VDKELPERVQ QLHEESLTAG RDILKNADEE EKRKWLAKDG QDWSGAFGDD1080
 1081 PKAYMNTKGK KKREPGVEEP LHDRFHPSSD EAHDDDSDED SYSSSDLGVE DASNVGNAQA1140
 1141 MSGGPGSPNQ GIRHQPTDLS PNSTNDDPRA SHATDRTDTT AYTSATGTTN GSSGSSKDYK1200
 1201 KQNKRTEERK HRGLMQWKPA RNARFAKNEA KIGLSKLKKK VTGGLDGRQP GVETETGQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle