YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111063840
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSSAAASS TGAVPGETPT QTKARLRRER LAAKSGASRL QQISALQGGP PKALSEIEKD  60
   61 VPVKPAPTPS RSTATASGTA TPDPDEIDIS QHHFQPTSQA RLPSPFAFDG NQSGAFPGMQ 120
  121 VPEGSEDPMM AMLQQMMGGG GGMPGMPGAP GQQGGAPPGL PPHLANMFSA MQGGPAAEPS 180
  181 PEQSSAWIWR LVHSLFSLVL AIYIVLQTPF TGSKMARHSL HDDDWTVQPT PVQSFARFFY 240
  241 FFATFEVVMQ SSRFFIEKGQ LQGSGMLSTV AGILPPPYGG YVRTVGRYSV IWSTVVSDAM 300
  301 VVVFVLGATS WWKGGAVA

Type	Start	End	Confidence
Cytoplasmic	1	185	0.62
Transmembrane Helix	186	210	0.81
Non-Cytoplasmic	211	234	0.46
Transmembrane Helix	235	249	0.48
Cytoplasmic	250	260	0.57
Transmembrane Helix	261	281	0.62
Non-Cytoplasmic	282	289	0.48
Transmembrane Helix	290	312	0.89
Cytoplasmic	313	318	0.52