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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|111063706, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYCAVLRSVP EGVVGGLERQ PMNRTPALFP TSTTTLDAFN QYRTVERAQS FELQELDTRT  60
   61 HTAQEGARES KRDRKRREKL EQLRETEEMK FSHSLQFNAV PDWSNHYIAY SNLKKQIYTL 120
  121 ETQINQKHEH ADPESSPLLV GDIDDPDKIF TNTLDAELEK VTSFYQLKEN EIYDELDALL 180
  181 KDEESYDEET DGFEQEQAHM PPEQRLRKSS IFRQVGFTKP RTMSAASGQS TNDDHAEDDD 240
  241 SDDDFNETSR LRKKSPDGRV RRSRTHDENM AASTDYSASR RRTSVAFEDY NDMAFSALYD 300
  301 EGVSLKKRTV SVYVSLCELR SFIQLNKTGF EKVLKKYDKI LDRKLKSHYL NKYVYPAHPF 360
  361 QQSTMDQLTA NLDRIESAYA HLCTKGDVAE AKRELRLHLR EHVVWERNTV WREMIGIERK 420
  421 AQAANIGITQ TLLGRDTTGG KIRRQGDDIQ PDLKEVSTPI GKYRCPQWLI SKTFWMLLAC 480
  481 IAVFVVLLVL PIMEKPEQQN CLAMVVFVSS LWATEAIPLF VTSLLVPFLA VTLDVVRSDD 540
  541 THERLDSKHA AGYVFSAMWT PVIMLLLGGF TIAAALSKYN IAKMMATFVL SKAGTKPRTV 600
  601 LLTNMFVAMF ASMWISNVAA PVLCFSIIQP ILRNLPADSD MTKALLLGIA LSSNIGGAAS 660
  661 PIASPQNLIA LQNMNPEPSW GVWFFVALPV CIISILCIWG LLLFTFKPGR GTTIVPIRPM 720
  721 KDKFTGVQWF ITIVTLVTII LWCVSHQLEP IFGDMGVVAI IPLVLFFGTG ILTKEDFNNF 780
  781 LWTIIILAAG GLALGKSVNS SGLLHTIAES ITVGVEGMSL YGVLVVFCAL ILVVATFISH 840
  841 TVAALIVLPL VQQVGQQMAE PHPNLLVMGA VLMASGAMGL PTSGFPNMTA IMMEDQHTGQ 900
  901 RYLEVKHFLT RGVPASIITF VVIITVGYGL MLAVGF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle