YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111062770
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	180	0.98
Transmembrane Helix	181	202	0.91
Non-Cytoplasmic	203	207	0.73
Transmembrane Helix	208	231	0.83
Cytoplasmic	232	243	0.83
Transmembrane Helix	244	265	0.50
Non-Cytoplasmic	266	273	0.47
Transmembrane Helix	274	297	0.86
Cytoplasmic	298	305	0.46
Transmembrane Helix	306	330	0.83
Non-Cytoplasmic	331	348	0.51
Transmembrane Helix	349	369	0.67
Cytoplasmic	370	395	0.62
Transmembrane Helix	396	415	0.59
Non-Cytoplasmic	416	442	0.59
Transmembrane Helix	443	467	0.76
Cytoplasmic	468	475	0.45
Transmembrane Helix	476	496	0.83
Non-Cytoplasmic	497	513	0.49
Transmembrane Helix	514	539	0.85
Cytoplasmic	540	545	0.49
Transmembrane Helix	546	567	0.90
Non-Cytoplasmic	568	573	0.49
Transmembrane Helix	574	595	0.90
Cytoplasmic	596	602	0.51

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIDSIRRHA HRVASSQGGE GTLNYNPFAR QRSRDQPVGD AENQYPVRWT VSGAAAPTIE  60
   61 EQQRLESREA QKEFGDQHHH NTEPTPTSTT SPNGFAGSSA DRELPPIDGE KQSNESTIIG 120
  121 SPRQNSNAVT KRGKFKGIFR KHEKENDMGE SELTRVDSDQ LSMEERKKRA LKRKIPVMDQ 180
  181 VKFVLFGAWI NVLLIMVPVG FAVNYAHIGP VPVFVVNFVA IIPLAAMLSS ATEELAIRVG 240
  241 ETLGGLLNAT FGNAVELIVS VQALIKNEIT IVKTSLIGSM LSNLLLVLGM SFFLGGVNRL 300
  301 EQFFNVTVAQ TAASLLALCI ASLIIPTVFH NMIAEDSVQD GDAKKNQELS RGTAVILLFV 360
  361 YGCYLTFQLK THATMYNAPS QKVEKRKSSK RQEGDAARGI AAIGAGTAAA SGGGVNAKTI 420
  421 FKNPDENHAD NAEEEDEFET PSLSVVGALV TLAISTTLVA FCSEFMVDSI NGLTETGAIS 480
  481 TTFVGLILLP IVGNAAEHAT AVTVAIKDKM DLSIGVAVGS SMQIALLVFP LIVILGWILG 540
  541 KDCMTLYFDT FQIATLFVSV LLVNYLIQDG KSHWLEGVLL MASYIIIALA AWFYPNIEEN 600
  601 QC