YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111062677
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	71	0.97
Transmembrane Helix	72	94	0.88
Non-Cytoplasmic	95	102	0.72
Transmembrane Helix	103	123	0.88
Cytoplasmic	124	142	0.82
Transmembrane Helix	143	164	0.83
Non-Cytoplasmic	165	175	0.79
Transmembrane Helix	176	195	0.91
Cytoplasmic	196	203	0.70
Transmembrane Helix	204	224	0.93
Non-Cytoplasmic	225	232	0.78
Transmembrane Helix	233	253	0.90
Cytoplasmic	254	266	0.78
Transmembrane Helix	267	285	0.94
Non-Cytoplasmic	286	305	0.93
Transmembrane Helix	306	327	0.89
Cytoplasmic	328	536	0.97
Transmembrane Helix	537	559	0.51
Non-Cytoplasmic	560	567	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPQHDAPPP DAAPVKSEPR LDAGNRHHDH YARRLPQWRN SLRNHLIPIV RWETPWLALL  60
   61 QDKIRSPALD SYFAYTANLG THTFFMIFLP IQFWCGYTNV GRATVFMLAA GVYLTGFLKD 120
  121 MVCLPRPLSP PLARISMSGS AALEYGFPSS HSANAVSVAF YAIYTIRQSP EAYHPYVWIG 180
  181 LQGLFYFYAV SIIFGRLYCG MHGFLDVIVG SVIGALITAF YLVCYDWLES WVFSGSYTDI 240
  241 FIATLVVCIM IRINPEPADD CPCFDDSVSF LGVVIGINLG AWHYAQTGLA LDYPIPSTVP 300
  301 FDLEKIGLLK ATLRILLGVV IIFMWRASAK SALLKGLPPF FRLLEQARLN LPRVYFLNAS 360
  361 KYTSIPTLRD DDNLIPPARE LPERIMNLAH PRKRSVSVGP QSAADAYETL HYRNRRRRES 420
  421 VSSLDGGVPE GALWEPSPRL QSKPQTPALE KTEPQLLGAS LLPTPMQSRV HSYEQMMGTG 480
  481 QAHSSEKERM TPPGSDTDTA GDTVQLNQTL TDEETETEKR ELFNQLMKPR VRYDVEVVTK 540
  541 LIVYSGIAWI AVEGNPLLFE LVGLGMP