YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111062538
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	100	0.84
Transmembrane Helix	101	119	0.74
Non-Cytoplasmic	120	139	0.86
Transmembrane Helix	140	158	0.92
Cytoplasmic	159	165	0.71
Transmembrane Helix	166	186	0.90
Non-Cytoplasmic	187	195	0.57
Transmembrane Helix	196	217	0.89
Cytoplasmic	218	226	0.83
Transmembrane Helix	227	248	0.88
Non-Cytoplasmic	249	260	0.79
Transmembrane Helix	261	281	0.82
Cytoplasmic	282	342	0.87
Transmembrane Helix	343	367	0.83
Non-Cytoplasmic	368	374	0.88
Transmembrane Helix	375	398	0.86
Cytoplasmic	399	407	0.82
Transmembrane Helix	408	429	0.91
Non-Cytoplasmic	430	438	0.82
Transmembrane Helix	439	460	0.94
Cytoplasmic	461	470	0.83
Transmembrane Helix	471	491	0.81
Non-Cytoplasmic	492	499	0.71
Transmembrane Helix	500	525	0.84
Cytoplasmic	526	759	0.80
Transmembrane Helix	760	779	0.50
Non-Cytoplasmic	780	1670	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSRRKPRDS ASLSTDESSP KLTPSPSSSR SSDGLPVIHE PNSFELRTIA PGGEPAAKAE  60
   61 DVEDDGLLPS ARRASIESAQ SFELYTPDED QAVLRKLDRK LVAFMALLYC LSFLDRSNIG 120
  121 NARIAGLEVD LDLSSTQYEW LLWAFYITYI TFAWMTLMYR IIPAHIYISV CILSWGIIAS 180
  181 LQAIVTSFGA LVVLRALLGV GEAAFGPGVP FFLSFFYRRN ELAFRTGLQV SASPLSSSFA 240
  241 GALAYFITKA AKNGPFSPWR LLFLLEGFPS LLIAIWAFDF VPDGPGVAKW LSPRQREVAM 300
  301 LRLRSETESQ DDEFHDEKHD GGRRTGGLDF REVLQTLKDP KCYLTAGMFF SCNVAFSSMP 360
  361 VFMPTIIRDM GYESIAAQGL SAPPYLFAFL VVVTTAYYSD RTQTRSTFII LHSFLATLGY 420
  421 GTIAVSGYME STNTMIRYMA LYPAVAGFFS AITIIITWTL NNQQTDSKKG TGMAILNVIG 480
  481 QMGPLLGTSI FPDRDGPYYV KGMSVCAAFM LLVGVLAAVL RWVLIRENKK AGQAQGGEYA 540
  541 GVPLEEGETR QDRAPNANTS TPLTSAIPTS TTRPEPRERA NSVASRATTS LESNADRQEE 600
  601 FDKASTVVGS PQNSPQNDGP INNFKPEADL EKKPGMPQED AASTKFGGEE EDPAVGVPIH 660
  661 RASTPSTVHK AKGVTYEKVG ENGINRMHKF SLYETSARFY LVGADIMEKQ YRVLKVDRTA 720
  721 PPGHLNIFED DILYSRREMH QLLNTIDEGN KGTGGMKLKC STWGLLGFIR FTEAYYMLLI 780
  781 TKRAQVAVLG GHYIYQVDGT EMIPLTTGST SRFQKDRNPE EARYLAMLNT LDLTRGFYFS 840
  841 YSYNVTRSLQ QNIIRERTSV NEGSDSPQRD FQDMFVWNHY LLHPARDSMK NMYDWCHPVI 900
  901 HGYIDQGSID VFGRRIYMTI IARRSRHFAG ARFLKRGTND MGYVANDVET EQIVSDALTT 960
  961 SFHAPGPRLY ASPTYTSYIQ HRGSIPLYWT QDNTGVTPKP DIDLSLMDPF YSAAAFHFDH1020
 1021 LFERYGAPLY VLNLIKARER TPRESKLLYE YKHCIDYLNQ FLPKENKIIY EAFDMSRAAK1080
 1081 TRGQDVIGTL ENLAEKVLCT TGFFHNGEYD VDAPQVQNGV ARTNCIDCLD RTNAAQFVIG1140
 1141 KRALGRQLHA LGVIAGNTVE YDSDCVEMFT HMFHGHGDAI AIQYGGSHLV NTMATYRKIN1200
 1201 QWQSSSRDMV ESFKRYYHNS FLDSQRQEAY NLFLGNYVYK HGQPMLWDLS TDYYLHHEDP1260
 1261 RSWLEKPRPN YITWYTPSFL QPRSLPQSIT PRLAQAVISA RDDYWLEYYR PLAISSFLKI1320
 1321 FAFRIASPRP GRDARDGTHP ARKDNLSPFI PRKKQHDEPQ VKDGKKALRK GVTIIDPSSE1380
 1381 TESRHGSIIG RRRREGNLSL HTESAMTHSI LRDPHFETEL PYSAPATTGT FPSLSNSGTT1440
 1441 STGLSSTLKP GFKPADKALI NQWTLTQFYE NSMNPSVSTT EEDEYSRYVE HPLNLPLVVS1500
 1501 NEGPSINDPS ALEYHDYLCM TEGEPHAVRD ADEASFRLAM TSTPRFDTDA ASLRSFASQR1560
 1561 PMTSQSINTP FSHAPSYSYP PLHNLHPHLQ QFHPEEPQPQ MYATPGKFVT PEQDVEEFEE1620
 1621 FLKVRENPLD VEDEDGAKKR YKAYRQWLRG KSFFKQSKVD PEWQNQLPVR