YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GMT_PHANO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.92
Transmembrane Helix	37	58	0.79
Non-Cytoplasmic	59	69	0.72
Transmembrane Helix	70	94	0.84
Cytoplasmic	95	107	0.85
Transmembrane Helix	108	126	0.95
Non-Cytoplasmic	127	133	0.71
Transmembrane Helix	134	153	0.89
Cytoplasmic	154	160	0.72
Transmembrane Helix	161	180	0.92
Non-Cytoplasmic	181	200	0.88
Transmembrane Helix	201	222	0.89
Cytoplasmic	223	236	0.93
Transmembrane Helix	237	255	0.72
Non-Cytoplasmic	256	273	0.66
Transmembrane Helix	274	295	0.92
Cytoplasmic	296	302	0.60
Transmembrane Helix	303	324	0.63
Non-Cytoplasmic	325	327	0.69
Transmembrane Helix	328	349	0.88
Cytoplasmic	350	381	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDDKKSDDY RVDMPSSRTS RAPSPIMRPA LKSAPSLTEN PMAAVLAYCA SSILMTVTNK  60
   61 YVLSGVDFNL NFFLLCVQSV VCVTAISICK AAGLITYRDF NTDEAKKWFP ISLLLIGMIY 120
  121 TGTWALKYLS IPVYTIFKNL TIILIAYGEV LWFGGSVTPM TLFSFGLMVL SSIIAAWADI 180
  181 QHALNSFGQQ SEAANEALST MHAGYLWMAF NCVCSATYLL SMRKRIKLTN FKDYDTMYYN 240
  241 NLLTIPILLV ASILVEDWSS ANIQKNFPPE QRNTVIMVMV ISGMSTVFIS YTSAWAVRVT 300
  301 SSTTYSMVGA LNKLPIAISG LVFFDAPVTF GSVSAIFVGF VSGIVYAVAK VRQNSKPKTV 360
  361 LPTTNIPLSA SSRSMQDSLK A