YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111062246, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.58
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRGVTIFIL VTVVVLGFAV HSVWTLLGLL VATGREDAIL RGELPAPNSG TVNDRPQLIP  60
   61 KIIHQTYKND SIPEHWKGPQ QSCLDLHPDY EYKLWTDKKS REFIAAEYPW FLETFDGYPY 120
  121 PIQRADAIRY FVLHHFGGIY IDLDDGCNRS LDPLLAYPAW VRRTLPTGIS NDVMGSIPRH 180
  181 PFFLKAIDSL TDYNRRWPLP YITVMASTGP LYLSIVWRHF NNANPEGDNR VRILFPDEYN 240
  241 NHSWSFFTHH VGNSWHRTDV KVIFWLARHW VFVTILGFAL GFTLLGFLYK IFVLNKLPSS 300
  301 PRMSPKARAL DRFAYTRIPF YRRISSKDFE LEDRHEV

Type	Start	End	Confidence
Signal Peptide	1	22	0.57
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	269	0.66
Transmembrane Helix	270	293	0.90
Cytoplasmic	294	337	0.73