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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|111060701
Protein type: Transmembrane
Type Confidence: 0.91
Topology Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPAPHGSAE DALELERIAV RRVDVTLDVE LMLTLCASRV PTVYTTLSAY PPSPQAQRAS  60
   61 HSPSAPPAAK DSTMEDPTMA GNYAFSNMRG PWLTTAGENM TLAAPAEDMS SWNEWMQYDP 120
  121 AAAASQHTQT VEAKPMSEQG PTGFLKPARQ DSPSANRPQP QPQHQHPLSQ SIPPTSTPVS 180
  181 APMYSQPNGI PFTFGQNIDA SPAFDFTGHT LSSPADVEVQ QQNGFYSSPM WQQQQQQRQQ 240
  241 ISDGFFSPPG YDHRTFVAPP ASTPSLHHSP SSLNNGGQGS SSSSHSSPEP AVNMKKRKSV 300
  301 EDDDEDDDLE SAPSGKKGKG QPPKKTAHNM IEKRYRTNLN DKIAALRDSV PSLRVMSRPN 360
  361 GKEEDDDPED LEGLTPAHKL NKATVLSKAT EYIRHLEKRN KRLQDEVNTL KTRVESYEKM 420
  421 AISGPMALHN PVGTPDGRYH EDPFMASHGL SMGGPPQGMI PVPDNIAALQ RGLPPQQHYA 480
  481 SAYPAYAGGA RQAHSGPPMV NGRRTSAMMG KLMVGSLAGL MVLEGLVERE QSQEDPAGRG 540
  541 LFALPINLAS ILAPRVSMGA STAQLPLAKL LLVMGAFFYL VGPLLSFSSK PKKKSTPVLL 600
  601 SPAPSLASPV EVRRKAWLTA IQTVWVPQHN FILEVAALGL KTLKLSTRKI IGWPGYAYLT 660
  661 GTTKEQEAAR LKAWEIALDA QLTGGDAEIS KSRLVLTLMA SGTLPDTPAR LMLKALHIRV 720
  721 LLWEIANAGH GVWWMVDELS AKLARSYWNM ARSEHRIAAN LASKQGSDAQ PLPDHLASLI 780
  781 ERECDDVLVP AIIQRAYNLA WNRPSAERTI IDPSMDGVVE DFAICSPLDA LAAWYSSFVL 840
  841 AKALTSTLAT KSSSPKDGVV TDLNLALQSA PPNSQAQLRA LVAQAVILDK DRNTRIVAAL 900
  901 DALPSTPSSG ATSLMNPVDN VPVAADVRTA LTLARCLSLT AFPSSSARRR ATDKINQITL 960
  961 SEVTTTLLSF VAAHKVLNLF MQDAELQAAT SFKLEHFAKS LRMWVGHETG KRSGLSNKVR1020
 1021 SRIVASCLEA STKLVGLKDK DDVADVDDGY VSASVNDD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle