YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111059636
Protein type:	Globular with Signal Peptide
Type Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTLRRRSVA FAAQLTVVPV PKNRRIIDLN NVPLVTGTSF VKWHLSHSTA AEHRGRTESC  60
   61 PIRDHKVQYN YDMSLPVRLT VDKNGMLQES FLELEVIQEY TGSGRGERIT LGNVKLNLAE 120
  121 YVEQSDLAPA DGDDPGVTRR YLMQESKINS TIKLGIYMRQ TEGDKNYIAP ALKTAQVFSG 180
  181 IAGIMAGEQG EVEDSGAAPS LSTKSREAGE LQDMYRRTLA AYWSAQPGEL KADECIEDIF 240
  241 AGGDGWGDRE KPYQQQRGQS VRYIAGDSSG SPSENEARHM RGSSNSSAHR KSHETLRQAD 300
  301 LHAMTKSSTV RGRGSLEQQA LQMKVEAERK RHRPHHEVDE FDLREDLCSW RRPI

Type	Start	End	Confidence
Signal Peptide	1	19	0.56
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	354	0.99