YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111059309
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRRNGAPQA SKDSMPPAED LTQDKQVRLL SQDAGHFSLI RALHLADFIT ELNGFCGVMS  60
   61 VFSSLRYCIQ DNPHNYTNLY LALGFVPLGL FFDFMDGKVA RWRKKASLMG QELDSLADLV 120
  121 SFGVGPAAAA FSLGLRTPVD HLLLTFFVLC GLTRLARFNV TVAMVPKDAS GKSQYFEGTP 180
  181 IPMSLILVQT MAFWVYKGWT LAQIPLGLWL EGSALEFHPV VFMFVLHGCL MVSKTLHIPK 240
  241 P

Type	Start	End	Confidence
Cytoplasmic	1	47	0.90
Transmembrane Helix	48	69	0.81
Non-Cytoplasmic	70	75	0.91
Transmembrane Helix	76	95	0.91
Cytoplasmic	96	114	0.89
Transmembrane Helix	115	135	0.90
Non-Cytoplasmic	136	140	0.81
Transmembrane Helix	141	158	0.91
Cytoplasmic	159	177	0.77
Transmembrane Helix	178	196	0.91
Non-Cytoplasmic	197	214	0.82
Transmembrane Helix	215	236	0.86
Cytoplasmic	237	241	0.82