YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111057971
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTSEPNRN SKYDPKKPHI TDMPITRSNW YQHVNWLNVI FIIGVPLAGC VAAFWTPLQW  60
   61 KTAAWAVIYY FWTGLGITAG YHRLWAHKSY NAGLPLRIWL AAVGAGAVEG SIRWWSRDHR 120
  121 AHHRYTDTNK DPYSVRKGLL YSHLGWMVMK QNPKRIGRTD ITDLNEDPVV VWQHKNYIKA 180
  181 VVTMGLIFPS AVAGLMWGDW MGGFIYAGIL RIFFVQQATF CVNSLAHWLG DQPFDDRNSP 240
  241 RDHVITALVT LGEGYHNFHH EFPSDYRNAI EWHQYDPTKW SIWLWSKLGL ASNLKQFRSN 300
  301 EIEKGRVQQL QKKIDQKRAK LDWGVPLDQL PVIEWDDYVE QAKNGRGLIA VAGVVHDVTD 360
  361 FINEHPGGKT LIKSGVGKDA TAMFNGGVYF HSNGAHNLLS TMRVGVIRGG CEVEIWKRAQ 420
  421 RENKDVGLVL DDAGNPIIRA GNQITKVAQP IQSASAA

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.48
Transmembrane Helix	34	58	0.86
Cytoplasmic	59	64	0.42
Transmembrane Helix	65	85	0.90
Non-Cytoplasmic	86	93	0.45
Transmembrane Helix	94	115	0.81
Cytoplasmic	116	180	0.58
Transmembrane Helix	181	215	0.70
Non-Cytoplasmic	216	457	0.57