YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111057519
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFSDIFRMV NFAVAVFMVL GGVAKLLPFN DFHASRTSMQ EALKIAQIVS EKLGVANSEP  60
   61 ERFSVERTLG RETVAVRTAL LEFQIPQQVA RYASFMFSFL GRGVCKPYHI PVLRQELITS 120
  121 VYIFIGSVIV GEKWFRIVPG TLVGIVGIGY AALEFVPSIE PPANMRDADA GWGAEQV

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.54
Transmembrane Helix	7	29	0.86
Cytoplasmic	30	133	0.57
Transmembrane Helix	134	153	0.68
Non-Cytoplasmic	154	177	0.65