YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111057198
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	285	0.70
Transmembrane Helix	286	311	0.81
Non-Cytoplasmic	312	316	0.62
Transmembrane Helix	317	338	0.90
Cytoplasmic	339	348	0.68
Transmembrane Helix	349	370	0.78
Non-Cytoplasmic	371	380	0.56
Transmembrane Helix	381	403	0.90
Cytoplasmic	404	413	0.61
Transmembrane Helix	414	438	0.85
Non-Cytoplasmic	439	453	0.62
Transmembrane Helix	454	474	0.93
Cytoplasmic	475	502	0.59
Transmembrane Helix	503	525	0.87
Non-Cytoplasmic	526	538	0.55
Transmembrane Helix	539	562	0.76
Cytoplasmic	563	570	0.65
Transmembrane Helix	571	595	0.86
Non-Cytoplasmic	596	601	0.65
Transmembrane Helix	602	623	0.91
Cytoplasmic	624	629	0.70
Transmembrane Helix	630	650	0.93
Non-Cytoplasmic	651	670	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLSKCRHAA SEAKLWASST CARDFLWFSV GDAQGEWSSG ASSRAGDALD SWFRGSARQP  60
   61 PKLLPCRHRN AQRHPLLRCC CALSPSFINA LIASVRYQNP RRAAQTDLHR GLRAAHFATS 120
  121 PPPAEPIAPR LEACSSANHG TSSVEVIVIY SQPLPHIPRP VPVTPSPAIG IAQPSWTASL 180
  181 GILNTIARIP SASAPASASA SASASASAQL ALSAHSSLHH PENIKRDFHR MGRHTSYPQN 240
  241 QQQNQPQTMP APNGRYHNET TPLIGRTQNS EDDSRFKTLP KHVVHLTYAT LASNYVNVLL 300
  301 VFVPIGIIAG LMHWNPTAVF ILNFIAIIPL AALLSFATEE LSAKLGQTLG GLMNATFGNA 360
  361 VELIVSIVAL KDGEIRIVQS SMLGSILSNI LLVLGCCFLA GGIREQERSF NETVASTMSS 420
  421 LMAVASASLI IPATLYAVMR NGDKHDPATD ENILVLSHGT SIILLILYIL YLYFQLYSHH 480
  481 NLFADVENQG GEDEEEPQIL SPVAAGVALV VVTVMVAICA EFLVGSIDSI VESANISKTF 540
  541 VGLVLIPIVG NAAEHVTAVI VAYKGKMDLA INVAIGSSMQ IALFVTPFLV LLGWAMHQPM 600
  601 TLHFQGFETI VFFISVLIVN YLIQDGKSNY LEGAMCIGIY AIIALAFYIY PDNANGELGP 660
  661 KFIASFFERS