YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169622172, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	91	0.74
Transmembrane Helix	92	115	0.81
Non-Cytoplasmic	116	140	0.66
Transmembrane Helix	141	161	0.92
Cytoplasmic	162	174	0.80
Transmembrane Helix	175	199	0.83
Non-Cytoplasmic	200	232	0.94
Transmembrane Helix	233	252	0.87
Cytoplasmic	253	256	0.68
Transmembrane Helix	257	274	0.67
Non-Cytoplasmic	275	318	0.63
Transmembrane Helix	319	341	0.71
Cytoplasmic	342	360	0.65
Transmembrane Helix	361	383	0.71
Non-Cytoplasmic	384	395	0.50
Transmembrane Helix	396	418	0.82
Cytoplasmic	419	419	0.29
Transmembrane Helix	420	440	0.59
Non-Cytoplasmic	441	453	0.51
Transmembrane Helix	454	486	0.73
Cytoplasmic	487	574	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVAHSFVGR YFRLEGSGHP KERKGSFFFT EFRAGLATFF AMAYIISVNS SIVSDSGGNC  60
   61 VCPASSKDNC ITDSPLEYLQ CIEEVKRDLV TATAAIAALT SFCMGLFANL PIALAPGMGL 120
  121 NAYFAYTVVG FHGSGMVPYE VALTAVFVEG FVFVGLTLLG IRQWLARAIP ASIKLATGVG 180
  181 IGLYLTIIGL AYSAGIGLLV GAQSTPLELA GCAPQYKDPE TGLCPESQKM RNPTMWIGIF 240
  241 CGGILTVMLM MYRVKGAIIF GILLVSIISW PRPTSVTYFP HDALGDSKFD FFKKVVTFHP 300
  301 ISRILAVQEW NIADHAGRWG LAFITFLYVD ILDCTGTLYS MARFSGVIDE RTQDFENSSI 360
  361 AYTVDALGIS IGSLMGSPPV TAFIESGAGI SEGGKTGLTA MFTGLCFFIA VFFAPIFASI 420
  421 PPWATGCTLI IVGSLMAQSA KDINWRYMGD AIPAFLTIAI MPFTYSIAYG LIAGICSYIL 480
  481 INTSVWVIEK ASGGRIVPHN KEEKENWTYR IPGGFLPPWL QRLSSGKKDF WRDNEQSEGV 540
  541 TVQQQDEHRN DDGSASSGHE KEYVSASKPG HHVA