YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111056787, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTRRKPVDD PVPTMPSSTQ PPLSSTRRSP FLPTRLEAQL ISIYPLTLLL GSIFSTLSPT  60
   61 SRSAPYSADS QSHLPEFAPS YFAQKKNVFN VYFVKVGWFW TTLAFGVFVG FHPGFGAGIS 120
  121 RRRVAAIIRY VVITGWWVAV TQWFFGPPLI DTMFRFTGGQ CERLRDPAER MDMSDTREFI 180
  181 TAATCKAVGG TWKGGHDISG HVFLLILGSS LLWLEFLPAL TRVEGLRDGR LITLADGKTA 240
  241 SVAVEKERVK VEGDATARGV KFALGVAGLM WWMLLMTAAY FHTWFEKFTG LAVAFTGLWV 300
  301 GVLYAQGGWR RSRPVLGMPG V

Type	Start	End	Confidence
Cytoplasmic	1	37	0.96
Transmembrane Helix	38	58	0.88
Non-Cytoplasmic	59	96	0.94
Transmembrane Helix	97	116	0.94
Cytoplasmic	117	125	0.81
Transmembrane Helix	126	146	0.93
Non-Cytoplasmic	147	197	0.98
Transmembrane Helix	198	220	0.88
Cytoplasmic	221	259	0.96
Transmembrane Helix	260	281	0.90
Non-Cytoplasmic	282	287	0.80
Transmembrane Helix	288	308	0.92
Cytoplasmic	309	321	0.95