YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111056748, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDPRTFLDA ALPFVKTLPE CADFSKTVEP FLPQLYDLPY RVAAHITDPQ GLQEIYLATN  60
   61 PLISSLAFAL FLSPIVWILS EINKNYSQVD RLWSILPAFY NVHFALWAYF NDLPSVRLNH 120
  121 VMAVSVLWSA RLTFNYWRKG GYTVGSEDYR WPIVKDFVGP TGFFIFNIAF IALGQNILLW 180
  181 LISTPTYVLL LSSRVAGAEL SSWDTFFGRT MLVFVVFEWF ADQQQWNFHQ AKAAYSKTAK 240
  241 VPSEYKYTRE QLDRGFNTSG LWAWSRHPNF LAEQAFWVCL YQWCCLESWT YYNWTGAGAM 300
  301 SYLILFQAST WLTELLSAGK YPEYKVYQSR VGRFFPKANT KNMAAPLTAK EKKKVQDAKV 360
  361 GKGSLKK

Type	Start	End	Confidence
Non-Cytoplasmic	1	56	0.62
Transmembrane Helix	57	79	0.86
Cytoplasmic	80	91	0.55
Transmembrane Helix	92	110	0.82
Non-Cytoplasmic	111	160	0.48
Transmembrane Helix	161	191	0.71
Cytoplasmic	192	204	0.52
Transmembrane Helix	205	221	0.70
Non-Cytoplasmic	222	297	0.67
Transmembrane Helix	298	312	0.45
Cytoplasmic	313	367	0.54