YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|169625216, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSEQPPSSI RILSLNCWGL KYIATLRNER LTEIANQIAA ADPRPDIVGL QECWTQQDYN  60
   61 VIREKTNSFL PYGKFYHSGI FGGGLAILSK WPLEESNMVR YPLNGRPAAF YRGDWFVGKG 120
  121 VACARIRIGP GRRDIAEVFC THLHAPYETE PHDSYICHRT AQAWEITKLM RGAAERGHLV 180
  181 IGLGDFNMVP LSLAHRIIET HSPVRDVWRI LHPDSSLGAA KDKVEKARGN PIPTANFNLT 240
  241 VNGATCDSEL NTWRWNKAHK KRLAKGENVQ IDPTVADPNA KRLDYIFFSS ARYHGADTPE 300
  301 WQLSAANVGM TMRHPTLHCS LSDHFSVEAT LTRNSTSAPD IHASPLAPEE TYLPIETYDE 360
  361 ILATTLKYQV RERVQRKLRI GHFFFQLSLS IGCLVGVWWS PRNYVAFLLM LLSSVGLSVG 420
  421 VIDGLMGLLF VGSEMRALRE FEWEVRNARE RAVVRGGGSK YGTT

Type	Start	End	Confidence
Cytoplasmic	1	379	0.90
Transmembrane Helix	380	400	0.93
Non-Cytoplasmic	401	406	0.80
Transmembrane Helix	407	431	0.91
Cytoplasmic	432	464	0.92