YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111055450, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	191	0.98
Transmembrane Helix	192	212	0.89
Non-Cytoplasmic	213	222	0.70
Transmembrane Helix	223	242	0.89
Cytoplasmic	243	272	0.95
Transmembrane Helix	273	294	0.93
Non-Cytoplasmic	295	328	0.96
Transmembrane Helix	329	349	0.87
Cytoplasmic	350	373	0.85
Transmembrane Helix	374	396	0.89
Non-Cytoplasmic	397	403	0.77
Transmembrane Helix	404	423	0.94
Cytoplasmic	424	430	0.86
Transmembrane Helix	431	453	0.87
Non-Cytoplasmic	454	472	0.69
Transmembrane Helix	473	495	0.66
Cytoplasmic	496	504	0.85
Transmembrane Helix	505	527	0.91
Non-Cytoplasmic	528	540	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADHNTNNDD EDTSKRASHF NQQRSSLRSD RSSFPSTRSR SRPQSQRHLN DFDLSPDRAD  60
   61 ASSPAPNVPY TRSRASSNAK GKSRARPYSS RRPAPDPEDA QKLEELLAPE TWANPYQLLA 120
  121 HGHGQTESST TVPLADLKSE KKRGVRNIAA GSQLDITALP SITSSNGEGM HAYVRSKPTP 180
  181 AAQRKARYAT ELYTISYLIF FAIWGTLARL GLQALTFYPG APVTFSELWA NVAGTFIFGF 240
  241 LAEDKSLFAA EWGDRDPETT HDKKRHGKVK KTIPLYIGLA TGFCGSFTSF SSFIRDVFLS 300
  301 LANELKAPEY HPSPSPSSLT ATAPRNNAYS ILAVPATILT TLSLCYCALK TGSHLAILLN 360
  361 PITPTLPFRL TRRFLDPLFV LLGPGCWLAA ILLSILPPQN AWRSQALFAC VFAPLGCLLR 420
  421 FYMSKLLNPL LPTFPLGTFA VNIFGTAVLG MSYDLQRVSL AHTGVVGGTL VGCQVLQGVQ 480
  481 DGFCGALTTV STWIAELDGL KRRHAYVYGA ASVGVGLGLA VAIMGGVRWT VGWADIICTT 540
  541