YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPSB_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGEDEFYLF QNISSVGPWD GPQYHIAPVW AFHLQAAFMG FVFFAGTPLN ATVLVATLHY  60
   61 KKLRQPLNYI LVNVSLGGFL FCIFSVFTVF IASCHGYFLF GRHVCALEAF LGSVAGLVTG 120
  121 WSLAFLAFER YLVICKPFGN IRFNSKHALT VVLITWTIGI GVSIPPFFGW SRFIPEGLQC 180
  181 SCGPDWYTVG TKYRSEHYTW FLFIFCFIIP LSLICFSYFQ LLRTLRAVAA QQQESATTQK 240
  241 AEREVSHMVV VMVGSFCLCY VPYAALAMYM VNNRNHGLYL RLVTIPAFFS KSSCVYNPII 300
  301 YCFMNKQFRA CILEMVCRKP MTDESDMSGS QKTEVSTVSS SKVGPH

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.90
Transmembrane Helix	34	58	0.84
Cytoplasmic	59	68	0.89
Transmembrane Helix	69	92	0.90
Non-Cytoplasmic	93	105	0.74
Transmembrane Helix	106	128	0.88
Cytoplasmic	129	147	0.87
Transmembrane Helix	148	168	0.94
Non-Cytoplasmic	169	198	0.95
Transmembrane Helix	199	222	0.89
Cytoplasmic	223	247	0.93
Transmembrane Helix	248	267	0.93
Non-Cytoplasmic	268	281	0.75
Transmembrane Helix	282	300	0.70
Cytoplasmic	301	346	0.75