YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110605340, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKVRIGVAG LGRIGRVHAE IILTRLENAE LVAVADVVES LARSVGEKYR VKWYTNFDAM  60
   61 LKDPEVDAVF ITTPTNLHKE MIVKAAEAGK HVFTEKPITV TVEEAREAVR AAEKAGVKLM 120
  121 VGYMRRFDDA YSAAKARIAR GEIGEPLVFI NIARDPGPPP GWAQDPRLSG GIFLDMLSHD 180
  181 FDMARFLVGR EVKEVYVKGE AALYDEIRQK GDLDLVTISF TFEGKGYGLI HGSRKSVFGY 240
  241 DLRTEVLGTE GTVYVGSQVD PNLAVGTKQG LSYRGVQWFW SRFYDAYVRE DEAFVSSILK 300
  301 DEEPPITGVD GLRVVEIAEA CWKSWREGRP VTVERSA

Type	Start	End	Confidence
Signal Peptide	1	19	0.57
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	337	0.99