YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110604460, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEPCDLSVI IPTFNEEENI AAIIDAVDGV LSQNGIHDEI LVVDDDSKDR TIPIVREIAG  60
   61 RQENVRLIVR REDHGLSQSV VEGFRSARSD ILQVIDADFS HPPDLIPLFY EAIRGGADIA 120
  121 VGSRYTKGGD IEAWPLKRRI ISLGATAFGR ILFPEITDPV SGFFAVRRQV VDGAPLAPRG 180
  181 YKILMEVLGK GRWRTFVEIP FVFKDREEGA SKLRAGTVID YLRQCGGIVR FSVTRRTGSV 240
  241 WTEWNKVVRF GLVGLSGIFV NMGLLYALTE IAGLYYLVSA AIAIELSIVN NFVLNDVWTF 300
  301 RSIENLKFER KFSRFGSFQA VSMGGLAINM AVLYLLVDIA GAYYLVANLA GILIAFAWNY 360
  361 AINRHYTWVR G

Type	Start	End	Confidence
Cytoplasmic	1	246	0.98
Transmembrane Helix	247	268	0.91
Non-Cytoplasmic	269	273	0.79
Transmembrane Helix	274	294	0.95
Cytoplasmic	295	314	0.91
Transmembrane Helix	315	335	0.95
Non-Cytoplasmic	336	341	0.73
Transmembrane Helix	342	362	0.94
Cytoplasmic	363	371	0.95