YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110550987, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLHDDQVTG GAAPRSRPVT VTVIDYDESR LEERTYTLPG EFRLSVLHEG VIWIDVDGVH  60
   61 DTGVIQAVGD AVGIHPLTLE DIANTRQRPK IEDYGDYLYV AVRMLAPGDG EFHSEQVSLV 120
  121 LGRGYVVSFQ EHPGDVFERI RERLRAGAGR LRSVGPDYLF YALLDAIVDG YFSVIEVFGE 180
  181 RIEAVEEEVV ADPDRGTLQV IYALKRSLIA LRRSVWPLRE AVAQLERGES PLIGEQTLVY 240
  241 FRDVYDHTIE VAETVETYRD TMSGILDVYL SSQSSRMNEI MKVLTVIATI FIPLTFIAGV 300
  301 YGMNFAYMPE ISHPWGYPAA LASMAVVAVA MLLYFRKKGW I

Type	Start	End	Confidence
Cytoplasmic	1	282	0.98
Transmembrane Helix	283	303	0.93
Non-Cytoplasmic	304	314	0.81
Transmembrane Helix	315	335	0.95
Cytoplasmic	336	341	0.92