YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110603460, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVELSVVIP AYNEEESVGL LYEELHEVLS ASGRSYEIVF VDDGSTDATF ERLRALHERD  60
   61 PAVRLVKFRS NFGQSAAMKA GFDHAGGEVI VTMDADLQND PHDIPRLLEK MEADDLDVVC 120
  121 GWRYNRHDPL SKKIFSKFAN LLRKTLTHET IHDSGCTLRA YRRECVKDLE LYGELHRYIP 180
  181 AMLLWKGYHV GELQTNHRDR SFGRSKYNWV RLAKGFLDLL VIVFWQRYSV RPMHVFGGAG 240
  241 LVMAGVGLAL ALYLGISRLF LGMGLTDRPL FLVALVLLIV GVQFVAFGIL ADILLKVYYG 300
  301 QNGRKPYLVE HMVQ

Type	Start	End	Confidence
Cytoplasmic	1	206	0.91
Transmembrane Helix	207	228	0.66
Non-Cytoplasmic	229	234	0.67
Transmembrane Helix	235	256	0.92
Cytoplasmic	257	269	0.64
Transmembrane Helix	270	291	0.93
Non-Cytoplasmic	292	314	0.74