YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110601695, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AFRYLAAGFG FIVQTTAIGL RWKESYDLGR GHAPLSNLFE SVVFFAWTIV LIFLIIDFKY  60
   61 KYRAVGFFVV PFALLGMAWA QLGLDSGIEP LVPALQSNWL LYHVVTCFLG YAAFAVACGL 120
  121 SIMYLIREKQ EDSSASSPAG GVIGMFPSVK VLDDLNYKAI MIGFPLLTLG IVTGAAWANY 180
  181 AWGTYWSWDP KETWSLIVWF VYAAFLHARI TRGWVGRRAA ILSIVGFAAT IFCYLGVNLF 240
  241 LSGLHSYGK

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.64
Transmembrane Helix	36	56	0.90
Cytoplasmic	57	63	0.81
Transmembrane Helix	64	83	0.94
Non-Cytoplasmic	84	99	0.92
Transmembrane Helix	100	125	0.88
Cytoplasmic	126	158	0.91
Transmembrane Helix	159	178	0.92
Non-Cytoplasmic	179	192	0.77
Transmembrane Helix	193	211	0.91
Cytoplasmic	212	219	0.81
Transmembrane Helix	220	242	0.90
Non-Cytoplasmic	243	249	0.82