YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110601390, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRALLVLRRR TREGQRAPGH LSQVPLSSQI KAKGQVTMSF KYIVFSAIAV LVIIIDQLTK  60
   61 LYIDRVMDLH SSITVIENFF NITYMRNKGA AFSFLSNFSY RIPFFILVSV VAILVILSVV 120
  121 YRLRQDQKFA VVSLALIFAG ALGNLIDRVR LGEVIDFLDV HWYRHHWPAF NVADSAICVG 180
  181 VFLLAVDMYL EERRQKKQGP

Type	Start	End	Confidence
Cytoplasmic	1	37	0.97
Transmembrane Helix	38	59	0.88
Non-Cytoplasmic	60	101	0.93
Transmembrane Helix	102	121	0.96
Cytoplasmic	122	128	0.88
Transmembrane Helix	129	149	0.90
Non-Cytoplasmic	150	166	0.93
Transmembrane Helix	167	190	0.87
Cytoplasmic	191	200	0.98