YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MTNA_GEODF
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFRTIEWRD NKVVMIDQTR LPGEEVYNVY EDFQSVAEAI RGMIIRGAPA IGVAAAMGVA  60
   61 LGAREIIADT YESFSRQLTN VCDVLARTRP TAVNLFWAIE RMKRVAESNK DRDLHFIRET 120
  121 LKAEAIRIEE EDLEICRAIG RHGAPLIREG ATVLTHCNAG GLATAGYGTA LGVIRAAHEA 180
  181 GKNIQVFADE TRPWLQGARL TAWELMKDGI PVTLIADNMA GYFMKKGAIT ACVVGADRIA 240
  241 ANGDTANKIG TYSVAVLAKE NKIPFYVAAP VSTLDLSLKS GDEIPIEERH ACEVTHLQGL 300
  301 PVAPEGVKVR NPAFDVTPAK YIAGIITEKG VVRGDYEREL KALVGQ

Type	Start	End	Confidence
Cytoplasmic	1	43	0.68
Transmembrane Helix	44	68	0.60
Non-Cytoplasmic	69	346	0.96