YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110548144, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSVISAIIA LGALIFIHEL GHFIFAKWFG VGVDKFSLGF GPKIIGKKIG ETEYLLSAFP  60
   61 LGGYVKMVGE GEDAELTEED KARSFAAKPP LQRIVIVAAG PLFNLLFAYF IFIIVYMVGV 120
  121 PAATTKIGEV VKDKPAARAG VQAKDMVTAI NGKVVNRWEE LSSTIIEGKG QPVELQVQRE 180
  181 GKTLNFRITP EKRTAKNLLG DTVTTPVLGI VSAGEIVIDH FGPVDAFTKG SAQTWNVIKI 240
  241 TVLSLVKLVE RAIPLDTIGG PIMIVKMAGQ QAAEGSVSFL AFVALLSVNL GILNLLPVPI 300
  301 LDGGHLFFYL WEIVFRKPIS PKAREIAQQI GLVLLISLMV LAFYNDIARY FIGQNQ

Type	Start	End	Confidence
Cytoplasmic	1	6	0.81
Transmembrane Helix	7	26	0.90
Non-Cytoplasmic	27	94	0.88
Transmembrane Helix	95	120	0.76
Cytoplasmic	121	275	0.79
Transmembrane Helix	276	293	0.78
Non-Cytoplasmic	294	294	0.20
Transmembrane Helix	295	311	0.59
Cytoplasmic	312	325	0.52
Transmembrane Helix	326	348	0.84
Non-Cytoplasmic	349	356	0.56