YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110601063, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKFDWEARS KSGSAQKGVM EAPNVAMVEA QLKKFGFTGI TIKEAGKGLN FEIKFPGGGK  60
   61 KIETKDLVVF TRQFATMIDS GLPLVQCLEI LSGQQENKSF KEILIKVKES VESGSTFADA 120
  121 LSKHPKAFDQ LYVNLVAAGE AGGILDTILN RLAAYIEKAM KLKKQVKGAM VYPITIMSIA 180
  181 VIVVGVILVF VIPTFAKMFA DFGGELPGPT KVVIALSSFL KKYIIVIIGA FFALKVAFSK 240
  241 YYSTVNGRKV IDQLALKMPV IGPLIRKVST AKFTRTLGTM ISSGVPIMDG LEIVAKTAGN 300
  301 VVVEKAIYDV RQAISEGKTM AEPLAACGVF PPMVVQMISV GEATGAMDAM LNKIADFYDD 360
  361 EVDDAVGALT SMMEPMLMVF LGTTVGGLVV AMYLPIFKLA GAVGG

Type	Start	End	Confidence
Cytoplasmic	1	169	0.93
Transmembrane Helix	170	192	0.94
Non-Cytoplasmic	193	218	0.84
Transmembrane Helix	219	239	0.85
Cytoplasmic	240	376	0.83
Transmembrane Helix	377	397	0.94
Non-Cytoplasmic	398	405	0.55