YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110548287, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLMGRHMVS IIRVALGTVF VYAGALKADD IVAFAGNIAA YQLLPYWANY LAAAILPWLE  60
   61 ICCGLLLIIG WRLRAASALV ILLNVVFIIA LSAALVRGLD IDCGCFKQGG GDKTSAWQAL 120
  121 LRDVVLLAAA IVVYLKAKPE RQRPA

Type	Start	End	Confidence
Cytoplasmic	1	8	0.95
Transmembrane Helix	9	28	0.90
Non-Cytoplasmic	29	46	0.89
Transmembrane Helix	47	69	0.90
Cytoplasmic	70	77	0.76
Transmembrane Helix	78	99	0.90
Non-Cytoplasmic	100	118	0.88
Transmembrane Helix	119	137	0.91
Cytoplasmic	138	145	0.95