YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|221565210, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTTAKDSIL NLPNILTLLR IAAIPLLVIL LLSPSREAGF WAAALFAIAS ITDWLDGYLA  60
   61 RRMGIETVFG KFLDPIADKL IVMAALIMLL PYNRVPAWMV LVILGREIII TGLRGVASTE 120
  121 GLVIPASNLG KFKTIFQIVA ILGLLLHYEY HWFFAIDLPI LTVNMHNIGM FYLWIATIIT 180
  181 IWSGVDYLVK FSRVIAK

Type	Start	End	Confidence
Cytoplasmic	1	11	0.85
Transmembrane Helix	12	32	0.90
Non-Cytoplasmic	33	37	0.79
Transmembrane Helix	38	59	0.86
Cytoplasmic	60	74	0.70
Transmembrane Helix	75	90	0.83
Non-Cytoplasmic	91	96	0.57
Transmembrane Helix	97	117	0.78
Cytoplasmic	118	133	0.71
Transmembrane Helix	134	151	0.92
Non-Cytoplasmic	152	169	0.82
Transmembrane Helix	170	189	0.94
Cytoplasmic	190	197	0.88