YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110549047, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPTRFIDSA NCAIEGILYT ARTQKHMRNH FLAALVVLIA TLFLHVTALE FILLTLSVSF  60
   61 VLFAELMNTA VEVVVDLVSP EYHPLAKIAK DTAAGAVLVA AIGTAVMGYL ILSHYIFPVY 120
  121 KEMLGMIGTP TEMGTLVSIL IVVIVVIIIK TRTSRGTPLQ GGLPSGHAAL AFSIATSVSL 180
  181 NTKDPMVSIL TIALATMVSH SRLLLNIHSL REVVLGALTG TGITLAVLLL FKVAG

Type	Start	End	Confidence
Cytoplasmic	1	29	0.94
Transmembrane Helix	30	49	0.92
Non-Cytoplasmic	50	55	0.57
Transmembrane Helix	56	78	0.77
Cytoplasmic	79	92	0.82
Transmembrane Helix	93	116	0.88
Non-Cytoplasmic	117	128	0.78
Transmembrane Helix	129	149	0.91
Cytoplasmic	150	158	0.76
Transmembrane Helix	159	179	0.82
Non-Cytoplasmic	180	185	0.73
Transmembrane Helix	186	205	0.84
Cytoplasmic	206	212	0.77
Transmembrane Helix	213	234	0.90
Non-Cytoplasmic	235	235	0.86