YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|221565816, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRAERFNQA DRVIRLGFWM NAVLMIMKIA AGHFGGSEAV FADGVESACD FIAILTTIIA  60
   61 LRIGRKPFDE KHPYGHGRAE SISAILVSLV IFITGFGILY KAVKTISAGV YEEPQLIAVL 120
  121 AAFVTILIKE WLCRFSLRVG GDLGSPAVMA IAKDHRKDAI TSIATLVGVT GAFFGFKVMD 180
  181 PLAAGLTSFF IFHIGYQTFS GAAHDLMDGL PPQEMLHAVT ALAEDVEGVE HVHEIKGRRS 240
  241 GQYVIIDLKL DMDPEMTVKQ SHAIATQVKK LVFDSFSNVG DVMIHINPHE EEHEDLIRL

Type	Start	End	Confidence
Cytoplasmic	1	12	0.98
Transmembrane Helix	13	34	0.87
Non-Cytoplasmic	35	43	0.69
Transmembrane Helix	44	64	0.88
Cytoplasmic	65	81	0.89
Transmembrane Helix	82	103	0.89
Non-Cytoplasmic	104	113	0.84
Transmembrane Helix	114	133	0.86
Cytoplasmic	134	158	0.89
Transmembrane Helix	159	176	0.85
Non-Cytoplasmic	177	181	0.58
Transmembrane Helix	182	203	0.62
Cytoplasmic	204	299	0.74