YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110599607, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.98
Transmembrane Helix	31	51	0.95
Non-Cytoplasmic	52	74	0.85
Transmembrane Helix	75	95	0.94
Cytoplasmic	96	108	0.90
Transmembrane Helix	109	132	0.86
Non-Cytoplasmic	133	151	0.91
Transmembrane Helix	152	174	0.91
Cytoplasmic	175	219	0.96
Transmembrane Helix	220	239	0.94
Non-Cytoplasmic	240	256	0.83
Transmembrane Helix	257	278	0.91
Cytoplasmic	279	298	0.88
Transmembrane Helix	299	320	0.93
Non-Cytoplasmic	321	337	0.92
Transmembrane Helix	338	358	0.93
Cytoplasmic	359	364	0.90
Transmembrane Helix	365	386	0.92
Non-Cytoplasmic	387	405	0.89
Transmembrane Helix	406	427	0.91
Cytoplasmic	428	517	0.98
Transmembrane Helix	518	541	0.88
Non-Cytoplasmic	542	552	0.87
Transmembrane Helix	553	577	0.87
Cytoplasmic	578	631	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGSGGTVAD LKYGDINDDV LNAMQTPRAP YFAAVALLAA GIGWGALVWL YQMQAGMGVT  60
   61 GLNRPVGWAV YIGNFVFWVG IAHSGTLISA ILYLLRANWR DAVSRSSEAM TIFAIMTAGL 120
  121 FPLIHLGRVW VLYYIIPYPS QRQLWPNFLS PLVWDVCAVG TYFTVSLIFW LVGMIPDLAA 180
  181 ARDRYEEKYG PQNIRASIYR IMALGWSGTG NQWRHYGRSY LYFAALATPL VISVHSVVSW 240
  241 DFAMSLLPGW HSTIFPPYFV AGAIHSGLAM VLTLLIPMRK LLHLERLIQR HHFEMVAKTI 300
  301 ILTAAIVGYS YACEVFIAWY SGNPFEWQFY KWRMTGPAAW IFWLIIPLNV LIPLTFVFKK 360
  361 VRTNFILLFV ISLLINLGMW LERLFIVYTS TAHDFIPHNW GGYIPTWVEI SITAASAAFF 420
  421 FFWFFGFSKI LPTVPLSDLK GRIADEEIEP TGCCETKVRQ KVQGGSSSVL AVFSNAGRLV 480
  481 KAVKLVCDAG YREMETFTPV KVEVVEKVMG HPKSPVRFWT LAGALAGLAG GLWLAVGTAL 540
  541 VNSIIVGGKP PVAIIPYCVI AFEGTILLGS IANLTGLVLH SRLYRLKVSP FYDRRFSRDK 600
  601 FGLLVSCGEG NIQSLQGMLS SAAAEEIHVH H