YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110599168, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLNKKIAIP LIFLLIAAAA GGGWYLWQQK NAKTSTGKDA KVAQGKQLYT CSMHPFIIKD  60
   61 KPGTCPICGM ELIKKIDGAA GSGPMTAEQK QQAEMIGHVS LSPTQRVMAN VATIEVRRQD 120
  121 LNKEINAVGI VQFDQSRQAK VTAWIGGRID RLFVDTVGSW VSKSKPVAEV YSPDLVATQQ 180
  181 EYLLAVKSRD QLKNSPIASI SQNGDGLVQS AKQRLLLFGV REKQIAELEK AGKPNIRLPI 240
  241 YTPLSGIVIE KMVQQGQYVN TGDQLFNIAD LSNVWVEVEV YENEFPNVHM GQRVEIRSQS 300
  301 FPGKSFSGKV SYIYPFLDPK TRTVKARVEM PNPGMKLKPD MFVNAIIKVP LGSAIVVPVT 360
  361 AVLDTGTRQV VWVESSPGMF EPRDVKVGQQ TDDKIQIISG INPGDKVAVS GGYLIDSESQ 420
  421 LKGGGGQDHS KHTGKPAAPG QAPAAPAPPK HDGMKMDDMK M

Type	Start	End	Confidence
Signal Peptide	1	21	0.89
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	461	0.99