YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110334136, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQYITAAVLA AFVGYVGAWY FGALEGNFAL LLFLATVVTG AYWLAERFIF LPRRRQAAQA  60
   61 LEAAAAQRRA ELDRMGIQKV DQDDLQEAKG RILMQPWWLD WTAGLFPVIA IVFLLRSFLF 120
  121 EPFKIPSGSM IPTLLVGDLI LVNKFTYGLR LPVINTKITE GNPLQRGDVV VFRYPPQPNM 180
  181 DYIKRVVGIP GDEVAYLNKR LTVNGTPVPT TALPDFFDPD AMRYFKQFEE HLGAHPHRLL 240
  241 NNPEVPAFVQ GASNYQFRDQ CRYSVEGVTC KVPEGHYFMM GDNRDNSLDS RYWGFVPDGN 300
  301 IVGKAFFVWM NFGNLKRIGP FN

Type	Start	End	Confidence
Cytoplasmic	1	4	0.62
Transmembrane Helix	5	23	0.74
Non-Cytoplasmic	24	27	0.72
Transmembrane Helix	28	45	0.94
Cytoplasmic	46	96	0.93
Transmembrane Helix	97	119	0.91
Non-Cytoplasmic	120	322	0.55