YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110334300, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVAARGIK DFVFEWEGKD RSGKIVRGEV RAAGENQVKA TLRRQGVLPT KIKKRRMSAG  60
   61 KKIKPKDIAL FTRQMATMMK AGVPLLQAFD IVGRGNTNPS VTKLLNDIRG DVETGTSLNA 120
  121 AFRKYPMYFD SLYCNLVEAG EAAGILEALL DRLALYMEKT EAIKSKIRSA LMYPISVIIV 180
  181 AFVVVTIIMI FVIPAFKEVF TSFGADLPAP TLFVMAISEF FVAYWWLIFG VIGGGFYFFM 240
  241 QAWKRSEKMQ RFMDRFLLKM PVFGALIDKS CVARWTRTLS TMFAAGVPLV EALDSVGGAS 300
  301 GNSVYAIATE KIQQEVSTGT SLTAAMGNAN VFPSMVLQMC AIGEESGSID HMLGKAADFY 360
  361 EAEVDEMVAG LSSLMEPIII VFLGTLIGGI VVSMYLPIFK LGQVV

Type	Start	End	Confidence
Cytoplasmic	1	170	0.98
Transmembrane Helix	171	195	0.90
Non-Cytoplasmic	196	221	0.91
Transmembrane Helix	222	243	0.91
Cytoplasmic	244	376	0.73
Transmembrane Helix	377	399	0.91
Non-Cytoplasmic	400	405	0.60